ANALYSIS OF CHANGING METHODS OF VERTICAL COORDINATION IN THE PORK INDUSTRY

This study examines the motivation behind contracts and vertical integration in the pork industry, and simulates the effects of potential improvements in coordination. Incentives related to lowering costs of measuring and sorting hogs, and protecting against opportunistic behavior associated with specific assets, can result in hog quality improvements. A framework for simulating the effects of increased coordination through contracts and vertical integration was developed and used to evaluate potential improvements in leanness. Although simulations suggest only modest changes in pork prices and supplies, gains in consumers' surplus could be substantial for larger demand shifts due to quality improvements.Contracts, Hogs, Lean pork, Simulation model, Vertical coordination, Vertical integration, Industrial Organization, Livestock Production/Industries,

A comparison of surface sensible and latent heat fluxes from aircraft and surface measurements in FIFE 1987

Surface fluxes of sensible and latent heat over a tall-grass prairie in central Kansas, as measured by 22 surface stations during FIFE 1987, are compared with values gained indirectly by linear extrapolation of aircraft-measured flux profiles to the surface. The results of 33 such comparisons covering the period 26 June to 13 October 1987 indicate that the sensible heat flux profiles were generally more linear with less scatter in the measurements at each level than were the latent heat flux profiles, the profile extrapolations of sensible heat flux in general underestimate the surface averages by about 30 percent, with slightly better agreement during periods of small flux, and the profile extrapolations of latent heat flux in general underestimate the surface averages by about 15 percent, with overestimates during periods of small fluxes (dry conditions) and overestimates during periods of large fluxes (moist conditions). Possible origins of the differences between the two sets of measurements are discussed, as directions for further research

Genetic ancestry of participants in the National Children's Study.

BackgroundThe National Children's Study (NCS) is a prospective epidemiological study in the USA tasked with identifying a nationally representative sample of 100,000 children, and following them from their gestation until they are 21 years of age. The objective of the study is to measure environmental and genetic influences on growth, development, and health. Determination of the ancestry of these NCS participants is important for assessing the diversity of study participants and for examining the effect of ancestry on various health outcomes.ResultsWe estimated the genetic ancestry of a convenience sample of 641 parents enrolled at the 7 original NCS Vanguard sites, by analyzing 30,000 markers on exome arrays, using the 1000 Genomes Project superpopulations as reference populations, and compared this with the measures of self-reported ethnicity and race. For 99% of the individuals, self-reported ethnicity and race agreed with the predicted superpopulation. NCS individuals self-reporting as Asian had genetic ancestry of either South Asian or East Asian groups, while those reporting as either Hispanic White or Hispanic Other had similar genetic ancestry. Of the 33 individuals who self-reported as Multiracial or Non-Hispanic Other, 33% matched the South Asian or East Asian groups, while these groups represented only 4.4% of the other reported categories.ConclusionsOur data suggest that self-reported ethnicity and race have some limitations in accurately capturing Hispanic and South Asian populations. Overall, however, our data indicate that despite the complexity of the US population, individuals know their ancestral origins, and that self-reported ethnicity and race is a reliable indicator of genetic ancestry

Quantitative assessment of relative ship strike risk to humpback whales (Megaptera novaeangliae) in the Great Barrier Reef World Heritage Area

The Australian east coast population of humpback whales (E1 sub-population) annually migrate to the Great Barrier Reef for mating and calving. Recent improvements in our understanding of the distribution of humpback whales on their breeding ground in the Great Barrier Reef World Heritage Area (GBRWHA) indicate the main breeding aggregation (highest density area) is in offshore waters of the southern GBR, in close proximity to coastal areas undergoing significant port development. The core breeding area overlaps the inner shipping route that services all ports on the Qld coast. A quantitative assessment of relative ship strike risk (ships > 80m) to humpback whales in the GBRWHA was recently undertaken. However, it was not possible to model the Capricorn Bunker Group due to limited humpback whale distribution data. This Capricorn Bunker Group is an area of significant shipping activity and represents a significant information gap on relative risk of ship strike to humpback whales in the GBR. This report presents data on the distribution of humpback whales in the Capricorn Bunker Group area from an aerial survey undertaken in July 2018. This data enabled a quantitative relative ship strike risk assessment for this area and a re-assessment of risk in the extended GBRWHA when integrated with existing aerial survey data

Ecophysiology of coral reef primary producers across an upwelling gradient in the tropical central Pacific

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, M. D., Fox, M. D., Kelly, E. L. A., Zgliczynski, B. J., Sandin, S. A., & Smith, J. E. Ecophysiology of coral reef primary producers across an upwelling gradient in the tropical central Pacific. Plos One, 15(2), (2020): e0228448, doi:10.1371/journal.pone.0228448.Upwelling is an important source of inorganic nutrients in marine systems, yet little is known about how gradients in upwelling affect primary producers on coral reefs. The Southern Line Islands span a natural gradient of inorganic nutrient concentrations across the equatorial upwelling region in the central Pacific. We used this gradient to test the hypothesis that benthic autotroph ecophysiology is enhanced on nutrient-enriched reefs. We measured metabolism and photophysiology of common benthic taxa, including the algae Porolithon, Avrainvillea, and Halimeda, and the corals Pocillopora and Montipora. We found that temperature (27.2–28.7°C) was inversely related to dissolved inorganic nitrogen (0.46–4.63 μM) and surface chlorophyll a concentrations (0.108–0.147 mg m-3), which increased near the equator. Contrary to our prediction, ecophysiology did not consistently track these patterns in all taxa. Though metabolic rates were generally variable, Porolithon and Avrainvillea photosynthesis was highest at the most productive and equatorial island (northernmost). Porolithon photosynthetic rates also generally increased with proximity to the equator. Photophysiology (maximum quantum yield) increased near the equator and was highest at northern islands in all taxa. Photosynthetic pigments also were variable, but chlorophyll a and carotenoids in Avrainvillea and Montipora were highest at the northern islands. Phycobilin pigments of Porolithon responded most consistently across the upwelling gradient, with higher phycoerythrin concentrations closer to the equator. Our findings demonstrate that the effects of in situ nutrient enrichment on benthic autotrophs may be more complex than laboratory experiments indicate. While upwelling is an important feature in some reef ecosystems, ancillary factors may regulate the associated consequences of nutrient enrichment on benthic reef organisms.This work was supported by funding from the Moore Family Foundation, the Gordon and Betty Moore Foundation, the Scripps family, and anonymous donors. The funders had no role in study design, data collection and analysis, or preparation of the manuscript

Use of the Cyto-Mine for rapid generation of high-producing clonal cell lines

There is significant pressure in the biopharmaceutical industry to reduce timelines from DNA to IND, and a large portion of the timeline on the critical path is the cell line development process. Whether utilizing random integration or targeted integration for introducing genes into the genome, the regulatory requirement to address monoclonality requires a time and resource-intensive step in the process. In addition, a screen for productivity such as minipool titering or FACS analysis is typically included prior to the monoclonality stage in order to minimize the work involved. The Janssen R&D Cell Line Development (CLD) group has partnered with Sphere Fluidics to evaluate the utility of the Cyto-Mine, which is a high-throughput, microfluidic instrument developed specifically to address unmet needs in the monoclonality and productivity screening stages of the cell line development process. The Cyto-Mine takes a mixed population of cells that the user loads into the device and encapsulates individual cells in picodroplets. The machine analyzes each individual droplet for productivity using a FRET-based screen, and then images and dispenses the high productivity droplets in individual wells of microtitre plates. This entire process is performed on a single-use cartridge and is completely animal-component free. We have tested the Cyto-Mine and associated screening method with mAb and non-mAb projects and found that it can generate cell lines with high productivity, high viability, and a high assurance of monoclonality after a single round of screening. Thus, we have determined that by incorporating the Cyto-Mine into our cell line development process we can significantly shorten the overall cell line development timeline and reduce screening and resource requirements without compromising productivity or product quality in our production cell lines

Addressing health literacy in patient decision aids

MethodsWe reviewed literature for evidence relevant to these two aims. When high-quality systematic reviews existed, we summarized their evidence. When reviews were unavailable, we conducted our own systematic reviews.ResultsAim 1: In an existing systematic review of PtDA trials, lower health literacy was associated with lower patient health knowledge (14 of 16 eligible studies). Fourteen studies reported practical design strategies to improve knowledge for lower health literacy patients. In our own systematic review, no studies reported on values clarity per se, but in 2 lower health literacy was related to higher decisional uncertainty and regret. Lower health literacy was associated with less desire for involvement in 3 studies, less question-asking in 2, and less patient-centered communication in 4 studies; its effects on other measures of patient involvement were mixed. Only one study assessed the effects of a health literacy intervention on outcomes; it showed that using video to improve the salience of health states reduced decisional uncertainty. Aim 2: In our review of 97 trials, only 3 PtDAs overtly addressed the needs of lower health literacy users. In 90% of trials, user health literacy and readability of the PtDA were not reported. However, increases in knowledge and informed choice were reported in those studies in which health literacy needs were addressed.ConclusionLower health literacy affects key decision-making outcomes, but few existing PtDAs have addressed the needs of lower health literacy users. The specific effects of PtDAs designed to mitigate the influence of low health literacy are unknown. More attention to the needs of patients with lower health literacy is indicated, to ensure that PtDAs are appropriate for lower as well as higher health literacy patients

Constraints on the Progenitor of SN 2010jl and Pre-Existing Hot Dust in its Surrounding Medium

A search for the progenitor of SN~2010jl, an unusually luminous core-collapse supernova of Type~IIn, using pre-explosion {\it Hubble}/WFPC2 and {\it Spitzer}/IRAC images of the region, yielded upper limits on the UV and near-infrared (IR) fluxes from any candidate star. These upper limits constrain the luminosity and effective temperature of the progenitor, the mass of any preexisting dust in its surrounding circumstellar medium (CSM), and dust proximity to the star. A {\it lower} limit on the CSM dust mass is required to hide a luminous progenitor from detection by {\it Hubble}. {\it Upper} limits on the CSM dust mass and constraints on its proximity to the star are set by requiring that the absorbed and reradiated IR emission not exceed the IRAC upper limits. Using the combined extinction-IR emission constraints we present viable $M_d-R_1$ combinations, where $M_d$ and $R_1$ are the CSM dust mass and its inner radius. These depend on the CSM outer radius, dust composition and grain size, and the properties of the progenitor. The results constrain the pre-supernova evolution of the progenitor, and the nature and origin of the observed post-explosion IR emission from SN~2010jl. In particular, an $\eta$~Car-type progenitor will require at least 4~mag of visual extinction to avoid detection by the {\it Hubble}. This can be achieved with dust masses $\gtrsim 10^{-3}$~\msun\ (less than the estimated 0.2-0.5~\msun\ around $\eta$~Car) which must be located at distances of $\gtrsim 10^{16}$~cm from the star to avoid detection by {\it Spitzer}.Comment: Accepted for publication in the ApJ. 14 pages 10 figures. The complete figure set for Figure 10 (24 images) is available in the online journa